Library Biology 1 (IAL) WBI11 Biological Molecules
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Biological Molecules

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Edexcel IAL Biology  •  Unit: Biological Molecules

Biological Molecules

🧬 Big idea: Living things are built from a handful of carbon-based "monomer" building blocks (sugars, fatty acids, glycerol) that join together — releasing water — to make bigger, more useful molecules, and can be broken apart again — using water — whenever the cell needs energy or raw materials.

Summary — What This Chapter Covers

  • Water is a polar molecule that forms hydrogen bonds — this makes it a superb solvent, gives it cohesion/adhesion, and makes it the medium for all life's chemistry.
  • Saccharides (carbohydrates) come in three sizes: monosaccharides (1 sugar unit), disaccharides (2 units), and polysaccharides (many units) — all built from C, H and O.
  • Condensation reactions join monomers together and release a water molecule; hydrolysis reactions use water to split them apart again.
  • Glycosidic bonds link sugar monomers (e.g. 1,4 or 1,6 bonds); ester bonds link glycerol to fatty acids in lipids.
  • Starch (amylose + amylopectin) stores energy in plants; glycogen does the same job in animals and fungi — both are insoluble, compact, and branched for fast glucose release.
  • Benedict's test detects reducing sugars (colour change blue → brick-red); a modified version with acid + neutralisation detects non-reducing sugars like sucrose.
  • Iodine test detects starch (orange/brown → blue-black).
  • Both tests can be made semi-quantitative using serial dilutions + a colorimeter to build a calibration curve.
  • Triglycerides (fats/oils) are made of 1 glycerol + 3 fatty acids joined by ester bonds (esterification), releasing 3 water molecules.
  • Fatty acids can be saturated (no C=C double bonds, straight chains) or unsaturated (mono/poly, kinked chains, mostly plant oils).

1. The Importance of Water

Why water is polar

Water (H₂O) is one oxygen atom covalently bonded to two hydrogen atoms. Oxygen is far more "electron-greedy" (electronegative) than hydrogen, so the shared electrons in each covalent bond spend more time near the oxygen. That creates a slightly negative region on the oxygen (δ⁻) and slightly positive regions on each hydrogen (δ⁺).

Think of it like a tug-of-war where oxygen is much stronger than hydrogen — it doesn't rip the rope away completely (that would be an ionic bond), it just pulls the middle point closer to its own side. That uneven "middle point" is called a dipole, and a molecule with a dipole like this is called a polar molecule.

Key Term
A hydrogen bond is a weak electrostatic attraction between the δ⁺ hydrogen on one water molecule and the δ⁻ oxygen on a neighbouring water molecule. Individually weak — but water molecules form so many of them that, together, they're powerful.

Why this matters — properties that come from hydrogen bonding

  • Cohesion — water molecules stick to each other via hydrogen bonds. This is why water flows as a continuous stream and why it can be pulled up a plant stem in one unbroken column.
  • Adhesion — water molecules stick to other polar surfaces (like the walls of a xylem vessel). Cohesion + adhesion together explain capillary action.
  • Excellent solvent — because water is polar, its δ⁺ ends surround negative ions (like Cl⁻) and its δ⁻ ends surround positive ions (like Na⁺). This pulls ionic and polar substances apart so they dissolve — which is essential because dissolved substances can move freely and react with each other inside cells.
δ- O / \ H H δ+ δ+ Two water molecules — the δ+ H of one is attracted to the δ- O of the next = HYDROGEN BOND
Analogy
Imagine water molecules as tiny magnets, each with a weak north pole (the H atoms) and a weak south pole (the O atom). Because they're weakly magnetic, they constantly stick together and let go — that's exactly why water is a flowing liquid at room temperature rather than a rigid solid.
Practice Question 1

Explain, in terms of electronegativity, why water is described as a polar molecule.

Practice Question 2

Sodium chloride dissolves readily in water. Explain how water molecules cause NaCl to dissolve.

2. Saccharides (Carbohydrates)

The three levels of carbohydrate

Carbohydrates all contain carbon, hydrogen and oxygen, and they're built in a "Lego-brick" hierarchy: small units (monomers) snap together into bigger and bigger structures.

LevelWhat it isExamples
MonosaccharideThe single sugar monomer — the basic Lego brickGlucose (6C), Fructose (6C), Galactose (6C), Ribose (5C), Glyceraldehyde (3C)
DisaccharideTwo monosaccharides joined by a glycosidic bondMaltose (glucose+glucose), Sucrose (glucose+fructose), Lactose (glucose+galactose)
PolysaccharideMany monosaccharides joined in long chainsStarch (amylose + amylopectin), Glycogen, Cellulose
Memory Trick
Mono = 1, Di = 2, Poly = many — exactly like "monorail" (one track), "dilemma" (two horns), and "polygon" (many sides).

Alpha (α) vs Beta (β) glucose

Glucose is a hexose (6-carbon) sugar that forms a six-membered ring. Carbons 1–5 form the ring, and carbon 6 sticks up above it. There are two nearly identical forms of glucose, and the only difference is which way round the H and OH groups point on carbon 1:

  • Alpha (α) glucose — the H is above the ring at carbon 1, the OH is below.
  • Beta (β) glucose — the H is below the ring at carbon 1, the OH is above.
Memory Trick
alpha has the H above  |  beta has the H below

This tiny difference matters enormously — it's the reason starch and glycogen (built from α-glucose) form compact, coiled/branched storage molecules, while cellulose (built from β-glucose, not required in this topic but useful context) forms straight, strong structural fibres.

Disaccharides & glycosidic bonds

Two monosaccharides join together via a condensation reaction to form a disaccharide, creating a glycosidic bond and releasing one water molecule. The "name" of the bond (1,4 or 1,2, etc.) tells you which numbered carbons on each sugar are joined.

DisaccharideMade fromBond type
Maltoseα-glucose + α-glucose1,4 glycosidic bond
Sucroseα-glucose + β-fructose1,2 glycosidic bond
Lactoseα-glucose + β-galactose1,4 glycosidic bond

Because disaccharides carry lots of exposed –OH (hydroxyl) groups, they form hydrogen bonds readily with water — which is why they're easily soluble and taste sweet, and why the body can quickly break them down for a fast source of energy.

Polysaccharides: Starch & Glycogen

Polysaccharides are the storage form of carbohydrate — big, insoluble, and packed with energy. Being insoluble is actually a feature, not a limitation: a soluble molecule would lower the water potential of the cell and cause water to rush in by osmosis, swelling and possibly bursting the cell. Starch and glycogen dodge this problem entirely.

Starch (plants) — made of two different polysaccharides

  • Amylose — an unbranched chain of α-glucose joined by 1,4 glycosidic bonds. It coils into a helix shape, held together by hydrogen bonds within the molecule. The helix packs the chain very compactly, so a lot of glucose can be stored in a small space.
  • Amylopectin — a branched molecule with 1,4 and 1,6 glycosidic bonds. The branches create lots of exposed terminal glucose molecules, which enzymes can hydrolyse quickly when the cell needs energy.

Both forms are insoluble and stored as granules inside plastids (membrane-bound organelles specialised for storage/photosynthesis in plant cells).

Glycogen (animals & fungi)

Glycogen works on the same principle as amylopectin — 1,4 and 1,6 glycosidic bonds — but is even more branched. More branches means more terminal glucose ends, which means glucose can be added or removed faster. This matters because animals are highly metabolically active and need to mobilise glucose quickly. It's stored as visible granules in liver and muscle cells.

Structure–Function Link (exam favourite!)
More branching → more terminal ends → faster hydrolysis → faster glucose release. This single idea explains why glycogen (very branched) suits fast-metabolism animals better than amylopectin (less branched) suits slower-metabolism plants.
FeatureAmyloseAmylopectinGlycogen
Monomerα-glucoseα-glucoseα-glucose
Branched?NoYes (~every 20 monomers)Yes (~every 10 monomers)
Helix shape?YesNoNo
Glycosidic bonds1,41,4 and 1,61,4 and 1,6
Found inPlantsPlantsAnimals/fungi
Practice Question 3

Glycogen is more highly branched than amylopectin. Suggest why this is an advantage to animal cells.

Practice Question 4

Explain why starch is a good storage molecule, referring to its solubility and structure.

3. Core Practical 1: Testing for Sugars & Starch

Benedict's Test — Reducing Sugars

Benedict's reagent is a blue solution containing copper(II) sulfate. Reducing sugars (which can donate electrons — remember OILRIG: Oxidation Is Loss, Reduction Is Gain, of electrons) reduce the blue Cu²⁺ ions to insoluble brick-red copper(I) oxide, which forms a precipitate.

Method

  1. Add an excess of Benedict's reagent to the sample in a test tube.
  2. Heat in a water bath that has been brought to the boil, for a few minutes.
  3. Observe the colour change.
Colour Scale (low → high concentration)
Blue (no reducing sugar) → Green → Yellow → Orange → Brick-red (high concentration of reducing sugar)
Don't Forget
You must use an excess of Benedict's solution — otherwise all the copper(II) sulfate could be used up before all the sugar has reacted, and you'd underestimate the sugar concentration.

Testing for non-reducing sugars (e.g. sucrose)

Sucrose won't react with Benedict's reagent directly because it isn't a reducing sugar. To test for it:

  1. Add dilute hydrochloric acid to the sample and heat in a boiling water bath — this hydrolyses any glycosidic bonds present, breaking the disaccharide into its monosaccharides.
  2. Neutralise with sodium hydrogencarbonate (check with red litmus paper, then add a little extra so conditions are slightly alkaline — Benedict's test needs this to work).
  3. Carry out the standard Benedict's test as normal — a colour change now confirms a reducing sugar was present (i.e. that a non-reducing sugar was hydrolysed into reducing monosaccharides).

The resulting monosaccharides expose an aldehyde or ketone functional group that can donate electrons to copper(II) sulfate, allowing the red precipitate to form.

Iodine Test — Starch

Add a few drops of orange/brown iodine solution directly to the sample.

Result
Starch present → colour changes from orange/brown to a distinctive blue-black. (Iodide ions slot into the centre of the coiled starch helix to form this coloured complex.) No colour change = no starch.

This test is especially useful in enzyme experiments — e.g. to show that amylase has fully digested starch (the blue-black colour disappears over time).

Making it Semi-Quantitative: Colorimetry

A colour change from "green" to "brick-red" is useful, but human eyes are bad at judging exact shades. To turn these tests into quantitative data (an actual concentration value), we use a colorimeter.

Step 1 — Serial dilution

Create a set of standard solutions of known concentration by serially diluting a stock solution (e.g. 0, 2, 4, 6, 8, 10 mmol dm⁻³ glucose, or "doubling dilutions" where concentration halves each time).

Step 2 — React identically

Treat every standard solution (and the unknown sample) in exactly the same way: same volume of Benedict's reagent or iodine, same water bath temperature, same time.

Step 3 — Colorimeter reading

A colorimeter shines a specific wavelength of light through the sample in a cuvette and measures how much light is absorbed. The filter colour chosen should contrast with the sample's colour — e.g. Benedict's turns orange/red, so a blue filter is used, because blue light is strongly absorbed by orange/red solutions.

Calibrating the colorimeter
Before taking readings, place a "blank" (e.g. water, or the sample with no sugar) into the colorimeter and set the reading to 0 absorbance. Repeat this periodically during the experiment to check it hasn't drifted.

Step 4 — Calibration curve

Plot absorbance (y-axis) against known concentration (x-axis) for your standards. This produces a calibration curve. Measure the absorbance of your unknown sample, then read across and down from the curve to estimate its concentration.

Absorbance 1.75 | x 1.5 | x 1.25 |----------------x <- unknown sample 1.0 | x : 0.75 | x : 0.5 | x : 0.25 | : 0 +----+----+----+----+----+---> Glucose conc. 0 2 4 6 8 10 (mmol dm-3) ^ read down to x-axis to estimate concentration
Practice Question 5

A student wants to compare the reducing sugar concentration of two fruit juices using a colorimeter. Describe how they could produce a calibration curve to determine the unknown concentrations.

4. Condensation & Hydrolysis

Two reactions, opposite directions

These two reaction types appear everywhere in biology — carbohydrates, lipids, and (later) proteins and nucleic acids all use the same basic pattern.

Condensation Reaction
Two monomers join together, forming a new covalent bond and releasing one water molecule. This is how disaccharides, polysaccharides, and triglycerides are all built.
Hydrolysis Reaction
A water molecule is added and used to break a covalent bond, splitting a larger molecule back into its component monomers. ("Hydro" = water, "lysis" = to break/split.)

In carbohydrate chemistry specifically, the bond formed/broken is called a glycosidic bond, and it forms between two hydroxyl (–OH) groups on adjacent monosaccharides. The name (1,4-glycosidic, 1,6-glycosidic, 1,2-glycosidic) tells you which numbered carbons on each ring are linked.

CONDENSATION: Monosaccharide + Monosaccharide ---> Disaccharide + H2O (glucose) (glucose) (maltose) HYDROLYSIS (reverse): Disaccharide + H2O ---> Monosaccharide + Monosaccharide (maltose) (glucose) (glucose)
Where you'll see hydrolysis in real life
Digestion in the alimentary tract (enzymes hydrolyse the glycosidic bonds in the starch you eat, into individual glucose molecules) and the breakdown of stored glycogen in liver/muscle cells whenever the body needs a quick glucose supply for respiration.
Practice Question 6

Maltose is hydrolysed to form two glucose molecules. Describe what happens to the water molecule in this reaction.

5. Triglycerides & Ester Bonds

What a triglyceride is made of

Lipids are macromolecules made of carbon, hydrogen and oxygen — but with a much lower proportion of oxygen than carbohydrates, which is exactly why they're non-polar and hydrophobic (insoluble in water). Triglycerides are the type of lipid that makes up fats and oils.

A triglyceride is built from two types of monomer:

  • Glycerol — a small alcohol molecule (C₃H₈O₃) with three hydroxyl (–OH) groups, one on each carbon.
  • Fatty acids (×3) — each has a long hydrocarbon "tail" (the R group, typically 4–24 carbons) with a methyl group (CH₃) at one end and a carboxyl group (–COOH) at the other. Shorthand formula: RCOOH.
Forming a Triglyceride — Esterification
One glycerol + three fatty acids react in three separate condensation reactions. Each time, the –OH group of glycerol bonds with the –COOH group of a fatty acid, forming an ester bond and releasing one water molecule. So, for one complete triglyceride to form, three water molecules are released in total.
Glycerol 3 x Fatty Acid | | -OH + HOOC-R ---> -O-CO-R + H2O (x3 times) | | (one ester bond formed per fatty acid attached) Result: 1 Glycerol + 3 Fatty acids -> 1 Triglyceride + 3 H2O

To break a triglyceride back down (during digestion, for example), the reverse — hydrolysis — occurs: water is added to break each ester bond, releasing the glycerol and fatty acids again.

Functions of lipids

Energy storage Insulation Buoyancy Protection Hormonal communication

Saturated vs Unsaturated Fatty Acids

Fatty acids vary in two ways: the length of the hydrocarbon (R group) chain, and whether the chain is saturated or unsaturated.

TypeStructureTypical source
SaturatedNo C=C double bonds — chain is "saturated" with hydrogen atoms, forms straight, unbranched chainsMainly animal fat
Monounsaturated1 C=C double bond, causing a kink in the chaine.g. olive oil (oleic acid)
PolyunsaturatedMore than 1 C=C double bond, multiple kinkse.g. vegetable oils (linoleic acid)

Most vegetable oils are unsaturated (exceptions: coconut and palm oil, which are saturated despite being plant-derived — a classic exam trap!).

Cis vs Trans fats
At a C=C double bond, if the H atoms are on the same side, it's a cis-fatty acid — these can be metabolised normally by enzymes. If the H atoms are on opposite sides, it's a trans-fatty acid — these can't form enzyme-substrate complexes properly and aren't metabolised efficiently, which is why they're linked to coronary heart disease.
Common Mistake
Don't assume "unsaturated = healthy plant oil" and "saturated = unhealthy animal fat" as a hard rule. Coconut oil and palm oil are plant-based but heavily saturated — always check the actual bonding structure, not just the source.
Practice Question 7

Describe the formation of a triglyceride from glycerol and fatty acids, including the name of the reaction and bond formed.

Practice Question 8

Explain the structural difference between a saturated and an unsaturated fatty acid, and how this relates to their physical properties.

What to Memorise

Key Terms

TermMeaning
Polar moleculeA molecule with unevenly distributed charge — one end slightly δ⁻, the other slightly δ⁺
Hydrogen bondWeak attraction between δ⁺ H on one molecule and δ⁻ atom on another
CohesionAttraction between water molecules and each other
AdhesionAttraction between water molecules and other polar surfaces
Monomer / PolymerSmall repeating subunit / large molecule made of many monomers
Glycosidic bondCovalent bond joining two monosaccharides, formed by condensation
Ester bondCovalent bond joining glycerol's –OH to a fatty acid's –COOH
Reducing sugarA sugar that can donate electrons (reduce Cu²⁺ to Cu⁺ in Benedict's test)
Condensation reactionJoins two molecules together, releasing one water molecule
Hydrolysis reactionSplits a molecule apart using a water molecule

Formulas & Quick Facts

  • Fatty acid shorthand: RCOOH
  • Glycerol formula: C₃H₈O₃
  • 1 triglyceride = 1 glycerol + 3 fatty acids − 3 H₂O
  • Benedict's positive result: blue → green → yellow → orange → brick-red
  • Iodine positive result: orange/brown → blue-black
  • OILRIG: Oxidation Is Loss, Reduction Is Gain (of electrons)

Concepts Checklist

Exam Tips

Structure-to-function questions
Examiners love asking "explain how the structure of X relates to its function." Always link a named structural feature (e.g. "branched," "helical," "many hydroxyl groups") to a specific functional consequence (e.g. "more terminal glucose molecules for faster hydrolysis," "compact so more can be stored," "soluble so easily transported").
Always specify "excess"
In both the Benedict's and iodine core practicals, examiners expect you to state that reagent is used in excess — this is a common mark that gets missed.
Water molecules — count them precisely
For a disaccharide: 1 condensation reaction = 1 water released. For a full triglyceride: 3 condensation reactions (glycerol + 3 fatty acids) = 3 water molecules released — a very common numeric slip-up in exams.
Common mistakes to avoid
  • Confusing condensation (releases water) with hydrolysis (uses water) — always double-check which direction the question is asking about.
  • Saying "sucrose is a reducing sugar" — it is NOT; it requires acid hydrolysis before Benedict's test will give a positive result.
  • Assuming all plant oils are unsaturated — coconut and palm oil are notable saturated exceptions.
  • Forgetting to mention that Benedict's test is only semi-quantitative by eye — full quantitative data requires a colorimeter and calibration curve.
  • Mixing up alpha and beta glucose — remember "alpha (a) has H above, beta (b) has H below."
What mark schemes look for
Use precise biological vocabulary — "hydrogen bond" not "weak bond," "glycosidic bond" not just "bond," "condensation reaction releasing water" rather than just "joined together." Specific named bonds and named reaction types are usually where the marking points sit.
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Also in the full note
  • 3. Core Practical 1: Testing for Sugars & Starch
  • 4. Condensation & Hydrolysis
  • 5. Triglycerides & Ester Bonds
  • Disaccharides & glycosidic bonds
  • Polysaccharides: Starch & Glycogen
  • Glycogen (animals & fungi)
  • Formulas & Quick Facts
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